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|
| Status |
Public on Jun 09, 2017 |
| Title |
breast cancer, Tam, patient 56 |
| Sample type |
RNA |
| |
|
| Source name |
Snap frozen primary breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
response: PR
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Gene expression data of primary breast tumor
|
| Data processing |
Cel files were processed using the affy and rma R packages, available at www.bioconductor.org.
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| |
|
| Submission date |
Jun 02, 2016 |
| Last update date |
Jun 09, 2017 |
| Contact name |
Marcel Smid |
| Organization name |
Erasmus MC
|
| Department |
Medical Oncology
|
| Street address |
Dr. Molewaterplein 50
|
| City |
Rotterdam |
| ZIP/Postal code |
PO Box 2040, 3000CA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL13158 |
| Series (2) |
| GSE82172 |
Expression data from primary breast tumors, M0 patients |
| GSE82173 |
Primary breast tumors |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
RMA signal intensity in 2log scale |
| Data table |
| ID_REF |
VALUE |
| 1007_PM_s_at |
8.80977661 |
| 1053_PM_at |
5.585081406 |
| 117_PM_at |
6.122254504 |
| 121_PM_at |
4.665061668 |
| 1255_PM_g_at |
2.754627022 |
| 1294_PM_at |
7.665357879 |
| 1316_PM_at |
4.797257299 |
| 1320_PM_at |
3.104701341 |
| 1405_PM_i_at |
10.60250721 |
| 1431_PM_at |
3.413075362 |
| 1438_PM_at |
3.200656528 |
| 1487_PM_at |
5.995324663 |
| 1494_PM_f_at |
3.559002274 |
| 1552256_PM_a_at |
6.336514689 |
| 1552257_PM_a_at |
7.165942628 |
| 1552258_PM_at |
4.400153732 |
| 1552261_PM_at |
2.639077815 |
| 1552263_PM_at |
6.92111341 |
| 1552264_PM_a_at |
5.455332367 |
| 1552266_PM_at |
2.941981279 |
Total number of rows: 54715
Table truncated, full table size 1373 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2185309_SXS102534.109.CEL.gz |
1.9 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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