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|
| Status |
Public on Jun 09, 2017 |
| Title |
breast cancer, Tam, patient 108 |
| Sample type |
RNA |
| |
|
| Source name |
Snap frozen primary breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
response: SD
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Gene expression data of primary breast tumor, M1
|
| Data processing |
Cel files were processed using the affy and frma R packages, available at www.bioconductor.org using median polish as summarize setting in fRMA.
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| |
|
| Submission date |
Jun 02, 2016 |
| Last update date |
Jun 09, 2017 |
| Contact name |
Marcel Smid |
| Organization name |
Erasmus MC
|
| Department |
Medical Oncology
|
| Street address |
Dr. Molewaterplein 50
|
| City |
Rotterdam |
| ZIP/Postal code |
PO Box 2040, 3000CA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE82171 |
Expression data from primary breast tumors |
| GSE82173 |
Primary breast tumors |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
fRMA signal intensity in 2log scale |
| Data table |
| ID_REF |
VALUE |
| 1007_s_at |
10.59407856 |
| 1053_at |
7.476692231 |
| 117_at |
6.04633314 |
| 121_at |
7.427361819 |
| 1255_g_at |
3.518817536 |
| 1294_at |
6.300493207 |
| 1316_at |
6.922665087 |
| 1320_at |
3.900868893 |
| 1405_i_at |
7.372315794 |
| 1431_at |
3.434302458 |
| 1438_at |
5.407288403 |
| 1487_at |
7.284552816 |
| 1494_f_at |
5.117953721 |
| 1552256_a_at |
7.755090058 |
| 1552257_a_at |
7.64430428 |
| 1552258_at |
4.003093286 |
| 1552261_at |
4.442958955 |
| 1552263_at |
5.353750026 |
| 1552264_a_at |
6.308205471 |
| 1552266_at |
3.500076099 |
Total number of rows: 54675
Table truncated, full table size 1212 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2185272_SXS102119.16.CEL.gz |
4.5 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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