NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2136829 Query DataSets for GSM2136829
Status Public on Apr 29, 2016
Title RPMI8226 hypoxia_miRNA
Sample type RNA
 
Source name RPMI8226 hypoxia
Organism Homo sapiens
Characteristics condition: hypoxia
cell line: RPMI8226
cell type: myeloma
Treatment protocol normoxia: 21%O2, hypoxia: 1%O2.
Growth protocol RPMI1640 plus 10% FCS.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol.
Label Cy3
Label protocol As materials and methods for miRNA microarray protocol version 2.4 (Agilent).
 
Hybridization protocol As materials and methods for miRNAmicroarray protocol version 2.4 (Agilent).
Scan protocol Agilent G2600A SureScan Microarray Scanner System.
Data processing GeneSpring (Agilent), computed normalized signal intensity with 90%tile normalization.
 
Submission date Apr 28, 2016
Last update date Apr 29, 2016
Contact name Sho Ikeda
E-mail(s) sikeda@med.akita-u.ac.jp
Organization name Akita univ.
Department Hematology
Lab Tagawa labo
Street address Hondo 1-1-1
City Akita
ZIP/Postal code 010-8543
Country Japan
 
Platform ID GPL18402
Series (1)
GSE80769 miRNA expression of myeloma cell lines under hypoxia

Data table header descriptions
ID_REF
VALUE Log2 normalized signal intensity

Data table
ID_REF VALUE
Blank -7.0269566
NC1_00000197 -7.0269566
NC1_00000215 -7.0269566
NC2_00079215 -7.0269566
NC2_00092197 -7.0269566
NC2_00106057 -7.0269566
NC2_00122731 -7.0269566
NegativeControl -7.0269566
dmr_285 4.6543407
dmr_3 9.362677
dmr_308 -7.0269566
dmr_316 -7.0269566
dmr_31a 3.3546782
dmr_6 8.814374
hsa-let-7a-3p -7.0269566
hsa-let-7a-5p 4.4185705
hsa-let-7b-3p -7.0269566
hsa-let-7b-5p 3.1723294
hsa-let-7c 2.428465
hsa-let-7d-3p -7.0269566

Total number of rows: 2027

Table truncated, full table size 50 Kbytes.




Supplementary file Size Download File type/resource
GSM2136829_SG13344329_254606412845_S001_miRNA_1105_Oct12_2_1.txt.gz 3.3 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap