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Sample GSM213124 Query DataSets for GSM213124
Status Public on Jul 26, 2007
Title umbilical cord_bpd: 8I
Sample type RNA
 
Source name umbilical cord tissue; high gestational age
Organism Homo sapiens
Characteristics 27 weeks male
Extracted molecule total RNA
Extraction protocol initial step used Trizol extraction of RNA, following manufacturer's recommended protocols, followed by Qiagen RNeasy Mini Kit per manufacturer's recommended protocols
Label biotin
Label protocol GeneChip® One-Cycle Target Labeling and Control Reagents according to the manufacturer's recommended protocols
 
Hybridization protocol Affymetrix Hybridization Oven 640 and GeneChip® Fluidics Station 450 according to the manufacturer's recommended protocols
Scan protocol Affymetrix GeneChip® Scanner 3000 according to the manufacturer's recommended protocols
Description high gestational age
Data processing MAS_5.0 scaled to 1500
 
Submission date Jul 25, 2007
Last update date Aug 28, 2018
Contact name Jennifer N Cohen
E-mail(s) jennifer.cohen@childrens.harvard.edu
Phone 6177328263
Organization name Brigham and Women's Hospital
Department Newborn Medicine
Street address 75 Francis Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL570
Series (1)
GSE8586 Expression profiles of extremely low gestational age newborns as predictors of BPD
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE MAS_5.0 value
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6673.8 P 0.000446
AFFX-BioB-M_at 10641.4 P 0.000044
AFFX-BioB-3_at 5170 P 0.00011
AFFX-BioC-5_at 22186.7 P 0.000052
AFFX-BioC-3_at 28819.9 P 0.000044
AFFX-BioDn-5_at 38908.1 P 0.000044
AFFX-BioDn-3_at 136504.3 P 0.000044
AFFX-CreX-5_at 293227.8 P 0.000052
AFFX-CreX-3_at 331840.8 P 0.000044
AFFX-DapX-5_at 208.9 A 0.175328
AFFX-DapX-M_at 105.2 A 0.574038
AFFX-DapX-3_at 34.8 A 0.969024
AFFX-LysX-5_at 359.3 A 0.095667
AFFX-LysX-M_at 282.2 A 0.724854
AFFX-LysX-3_at 302.4 A 0.275146
AFFX-PheX-5_at 51 A 0.772364
AFFX-PheX-M_at 33.4 A 0.891021
AFFX-PheX-3_at 181.3 A 0.718606
AFFX-ThrX-5_at 68.1 A 0.645547
AFFX-ThrX-M_at 41.1 A 0.81489

Total number of rows: 54675

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM213124.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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