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Sample GSM203384 Query DataSets for GSM203384
Status Public on Jun 22, 2007
Title R685P01201
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 32%
Percentage of Stroma: 54%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 5%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.85854258
1053_at 6.466842899
117_at 6.789087477
121_at 9.668116512
1255_g_at 4.912571093
1294_at 7.890980551
1316_at 6.004122005
1320_at 5.693917742
1405_i_at 6.104579274
1431_at 4.703325364
1438_at 8.55409284
1487_at 8.012122457
1494_f_at 7.305926955
1598_g_at 11.22081794
160020_at 9.003062602
1729_at 8.169161533
1773_at 6.556268702
177_at 6.094543864
179_at 9.852020279
1861_at 7.200125364

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203384.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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