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Sample GSM203376 Query DataSets for GSM203376
Status Public on Jun 22, 2007
Title R662P00808
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 67%
Percentage of Stroma: 31%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.4842288
1053_at 6.50949236
117_at 7.205965682
121_at 10.08905418
1255_g_at 5.149511695
1294_at 8.249901936
1316_at 6.375129157
1320_at 5.697990206
1405_i_at 5.612043876
1431_at 4.876928016
1438_at 8.924199964
1487_at 8.445262662
1494_f_at 7.629707568
1598_g_at 10.48098345
160020_at 9.097316166
1729_at 8.090241249
1773_at 6.643402866
177_at 6.630837282
179_at 10.27983281
1861_at 7.672236533

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203376.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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