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Sample GSM203375 Query DataSets for GSM203375
Status Public on Jun 22, 2007
Title R661P00807
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 88%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 9%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.02971317
1053_at 6.312897242
117_at 7.090124734
121_at 10.06996565
1255_g_at 5.028254737
1294_at 8.725578775
1316_at 6.100526164
1320_at 5.785086055
1405_i_at 6.028896461
1431_at 4.611557012
1438_at 8.510856382
1487_at 8.487374827
1494_f_at 8.065585102
1598_g_at 11.53971983
160020_at 9.040121965
1729_at 8.090253615
1773_at 6.737560374
177_at 6.70547609
179_at 10.22386773
1861_at 7.131228924

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203375.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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