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Sample GSM203364 Query DataSets for GSM203364
Status Public on Jun 22, 2007
Title R643P00803
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 76%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 7%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.24696728
1053_at 6.463053331
117_at 6.794094754
121_at 9.615455684
1255_g_at 4.850363988
1294_at 8.883528649
1316_at 6.052498391
1320_at 5.62404387
1405_i_at 8.168275285
1431_at 4.596334019
1438_at 8.41687987
1487_at 8.305010615
1494_f_at 7.440271899
1598_g_at 11.22496053
160020_at 8.853533075
1729_at 8.094387842
1773_at 6.493820257
177_at 6.300316987
179_at 9.781704492
1861_at 7.289438178

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203364.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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