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Sample GSM203352 Query DataSets for GSM203352
Status Public on Jun 22, 2007
Title R590P01071
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 80%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.81665389
1053_at 6.148526733
117_at 6.883496356
121_at 9.685244959
1255_g_at 4.8566824
1294_at 8.356125764
1316_at 6.005728199
1320_at 5.66547285
1405_i_at 7.225280845
1431_at 4.685724491
1438_at 8.291353053
1487_at 7.928422716
1494_f_at 7.473160993
1598_g_at 11.56909711
160020_at 9.28735805
1729_at 8.324444077
1773_at 6.458168257
177_at 6.2113804
179_at 9.764273349
1861_at 6.672182381

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203352.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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