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Sample GSM203319 Query DataSets for GSM203319
Status Public on Jun 22, 2007
Title R528P00607
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 50%
Percentage of BPH: 38%
Percentage of Atrophic Gland: 11%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.37163614
1053_at 6.272375235
117_at 6.757933458
121_at 9.58021473
1255_g_at 4.897591397
1294_at 8.384957003
1316_at 5.998915083
1320_at 5.581395754
1405_i_at 6.356273017
1431_at 4.595015061
1438_at 8.16647817
1487_at 7.9672076
1494_f_at 7.322731598
1598_g_at 10.91886662
160020_at 9.010527017
1729_at 8.104063222
1773_at 6.307367816
177_at 6.198282036
179_at 9.59829927
1861_at 6.796384103

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203319.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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