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Sample GSM203314 Query DataSets for GSM203314
Status Public on Jun 22, 2007
Title R523P00585
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 67%
Percentage of Stroma: 24%
Percentage of BPH: 9%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.501226805
1053_at 6.860355015
117_at 6.788170511
121_at 9.568391208
1255_g_at 4.908471763
1294_at 7.885169744
1316_at 6.009221817
1320_at 5.644896207
1405_i_at 5.843892289
1431_at 4.651650759
1438_at 8.486983317
1487_at 7.988387161
1494_f_at 7.256152254
1598_g_at 9.905750595
160020_at 8.63957046
1729_at 8.022834878
1773_at 6.354847528
177_at 6.241111273
179_at 9.484577114
1861_at 7.677842056

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203314.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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