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Sample GSM203309 Query DataSets for GSM203309
Status Public on Jun 22, 2007
Title R494P00442
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 70%
Percentage of Stroma: 26%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.92968129
1053_at 6.224551437
117_at 6.826375933
121_at 9.59700968
1255_g_at 4.985925544
1294_at 7.905716553
1316_at 6.056275686
1320_at 5.590326747
1405_i_at 5.968492644
1431_at 4.485113742
1438_at 9.360943815
1487_at 8.463595275
1494_f_at 7.397610004
1598_g_at 10.47111409
160020_at 8.691482519
1729_at 7.878217864
1773_at 6.557069619
177_at 6.242279575
179_at 9.716567305
1861_at 8.168676949

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203309.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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