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Sample GSM203308 Query DataSets for GSM203308
Status Public on Jun 22, 2007
Title R493P00433
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 5%
Percentage of Stroma: 70%
Percentage of BPH: 7%
Percentage of Atrophic Gland: 15%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.81472336
1053_at 6.078169305
117_at 6.708539322
121_at 9.320903609
1255_g_at 4.839675746
1294_at 8.525039401
1316_at 6.037913295
1320_at 5.354784978
1405_i_at 6.909522664
1431_at 4.504953966
1438_at 7.900024539
1487_at 8.07294166
1494_f_at 7.197381548
1598_g_at 11.15763394
160020_at 8.617461613
1729_at 8.932350554
1773_at 6.226259245
177_at 6.134463437
179_at 9.414475063
1861_at 6.525734445

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203308.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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