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Sample GSM203305 Query DataSets for GSM203305
Status Public on Jun 22, 2007
Title R490P00325
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 43%
Percentage of Stroma: 50%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.30628309
1053_at 6.280314832
117_at 6.829130812
121_at 9.677459992
1255_g_at 4.807957752
1294_at 8.324604515
1316_at 6.124743728
1320_at 5.468990941
1405_i_at 7.809505525
1431_at 4.636136351
1438_at 8.136889335
1487_at 7.71929564
1494_f_at 7.232597407
1598_g_at 10.80245598
160020_at 8.738701791
1729_at 8.254130941
1773_at 6.318221134
177_at 6.13732997
179_at 9.363795469
1861_at 6.623764511

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203305.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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