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Sample GSM203303 Query DataSets for GSM203303
Status Public on Jun 22, 2007
Title R488P00312
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 9%
Percentage of Stroma: 78%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 12%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.68651425
1053_at 6.49351996
117_at 6.885745133
121_at 9.712838902
1255_g_at 4.90004463
1294_at 8.296021013
1316_at 5.930518287
1320_at 5.743281247
1405_i_at 6.396689519
1431_at 4.588443421
1438_at 8.703827289
1487_at 8.236880785
1494_f_at 7.50008018
1598_g_at 11.05518598
160020_at 8.901395382
1729_at 8.114320206
1773_at 6.311002614
177_at 6.314018834
179_at 9.749612187
1861_at 6.688991768

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203303.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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