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Sample GSM203288 Query DataSets for GSM203288
Status Public on Jun 22, 2007
Title R461P00322
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 3%
Percentage of Stroma: 85%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 8%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.13094214
1053_at 6.259152348
117_at 6.963126683
121_at 9.579193175
1255_g_at 4.795747845
1294_at 8.374572976
1316_at 6.051073088
1320_at 5.54465516
1405_i_at 6.589482746
1431_at 4.586809671
1438_at 8.278069204
1487_at 8.109504294
1494_f_at 7.464671557
1598_g_at 11.91152224
160020_at 8.677606804
1729_at 8.137936036
1773_at 6.32153576
177_at 6.103329563
179_at 9.676566569
1861_at 7.117559886

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203288.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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