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Sample GSM203276 Query DataSets for GSM203276
Status Public on Jun 22, 2007
Title R436P00056
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 55%
Percentage of BPH: 37%
Percentage of Atrophic Gland: 5%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.51074575
1053_at 6.28614821
117_at 6.717734135
121_at 9.73450523
1255_g_at 4.902317126
1294_at 8.49032888
1316_at 6.140987759
1320_at 5.730640388
1405_i_at 7.043198515
1431_at 4.528256516
1438_at 8.477109602
1487_at 7.956606405
1494_f_at 7.308980894
1598_g_at 11.29066808
160020_at 9.017322321
1729_at 8.248627096
1773_at 6.715868612
177_at 6.204806774
179_at 9.796379247
1861_at 7.006792149

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203276.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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