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Sample GSM203263 Query DataSets for GSM203263
Status Public on Jun 22, 2007
Title R423P00094
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 40%
Percentage of BPH: 40%
Percentage of Atrophic Gland: 20%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.65298296
1053_at 6.281337502
117_at 6.848387155
121_at 9.532484607
1255_g_at 4.824996998
1294_at 8.700740711
1316_at 6.034178023
1320_at 5.66345108
1405_i_at 7.694031163
1431_at 4.600906951
1438_at 8.325244959
1487_at 8.002532709
1494_f_at 7.535848229
1598_g_at 11.03731804
160020_at 8.948947028
1729_at 8.052130508
1773_at 6.632607538
177_at 6.223250044
179_at 9.703143247
1861_at 6.669092986

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203263.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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