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Sample GSM203261 Query DataSets for GSM203261
Status Public on Jun 22, 2007
Title R421P00048
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 55%
Percentage of Stroma: 25%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.41611687
1053_at 6.265019702
117_at 6.649243746
121_at 9.454792485
1255_g_at 4.80258037
1294_at 8.066076965
1316_at 5.933363075
1320_at 5.710183657
1405_i_at 6.3887835
1431_at 4.539139933
1438_at 8.061952866
1487_at 7.965599208
1494_f_at 7.211749891
1598_g_at 10.44999443
160020_at 8.637309916
1729_at 8.224520657
1773_at 6.874665725
177_at 6.246866448
179_at 9.608436109
1861_at 7.180379219

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203261.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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