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Sample GSM194189 Query DataSets for GSM194189
Status Public on May 26, 2009
Title LowSES 16
Sample type RNA
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
VALUE Log2 metric RMA expression estimate.

Data table
205048_s_at 3.332496
202917_s_at 8.298120
221728_x_at 9.488011
220784_s_at 4.245590
209480_at 8.837136
214146_s_at 5.804534
214218_s_at 8.134293
209116_x_at 8.142668
200782_at 9.342659
201743_at 5.515989
211696_x_at 8.572107
202912_at 6.973474
214414_x_at 8.721969
202651_at 6.848213
217941_s_at 8.758935
206390_x_at 7.130724
202503_s_at 8.627528
202602_s_at 7.815530
215223_s_at 7.071965
217022_s_at 8.025791

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.

Supplementary file Size Download File type/resource
GSM194189.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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