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Sample GSM187176 Query DataSets for GSM187176
Status Public on Jun 20, 2008
Title GBM, radiotherapy (159)
Sample type RNA
 
Source name brain (resected material)
Organism Homo sapiens
Characteristics tissue: brain (resected material)
disease status: GBM
patient: 159
age: 60.9
gender: FEMALE
treatment: radiotherapy
survival status: 1
survival time in months: 14.47
mgmt status: U
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Lipid Tissue mini kit protocol
Label biotin
Label protocol Affymetrix Small sample target labelling assay (double amplification) with ENZO kit, start with 100ng
 
Hybridization protocol Affymetrix hybridisation protocol
Scan protocol GeneChip Operating Software instructions using GeneChip Scanner 3000 High-Resolution Scanning Patch
Description MGMT status: U
Data processing RMA: background substruction, quantile normalization and median polish summarization.
 
Submission date May 03, 2007
Last update date Aug 28, 2018
Contact name Monika E Hegi
E-mail(s) monika.hegi@chuv.ch
Organization name CHUV
Department Neurosurgery
Lab LTBG
Street address Bugnon 46
City Lausanne
State/province Vaud
ZIP/Postal code 1011
Country Switzerland
 
Platform ID GPL570
Series (1)
GSE7696 Glioblastoma from a homogenous cohort of patients treated within clinical trial
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix probe sets
VALUE RMA normalized signal intensities (log2)

Data table
ID_REF VALUE
1007_s_at 11.416668
1053_at 8.284503
117_at 6.956408
121_at 9.209982
1255_g_at 3.775386
1294_at 8.153868
1316_at 6.548577
1320_at 5.570748
1405_i_at 4.946263
1431_at 4.397119
1438_at 6.955006
1487_at 7.393562
1494_f_at 6.814755
1552256_a_at 8.411898
1552257_a_at 7.67004
1552258_at 5.78103
1552261_at 5.659752
1552263_at 5.111792
1552264_a_at 5.811399
1552266_at 5.948726

Total number of rows: 54675

Table truncated, full table size 1053 Kbytes.




Supplementary file Size Download File type/resource
GSM187176.cel.gz 8.2 Mb (ftp)(http) CEL

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