|
| Status |
Public on Apr 19, 2017 |
| Title |
A16-W [tissue] |
| Sample type |
RNA |
| |
|
| Source name |
Patient wheal
|
| Organism |
Homo sapiens |
| Characteristics |
disease status: chronic spontaneous urticaria (CSU)/chronic idiopathic urticaria (CIU)
tissue: wheal
individual id: A16
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using standard RNA extraction protocols (Trizol).
|
| Label |
Cy3
|
| Label protocol |
100ng of total RNA from each sample was amplified by linear T7 method, and the cRNA labeled with Cy3 using the Agilent Low Input Quick Amp Labeling Kit (Agilent Technologies) following the manufacturer's protocol.
|
| |
|
| Hybridization protocol |
Samples were hybridized to Agilent-039494 Whole Human Genome Oligo Microarrays 8x60K v2, according to the Agilent 60-mer oligo microarray processing protocol and using the Agilent Gene Expression Hybridization Kit (Agilent Technologies).
|
| Scan protocol |
Fluorescence signals of the hybridized Agilent Microarrays were detected using Agilent's Microarray Scanner System (Agilent Technologies).
|
| Description |
Gene expression from total RNA.
|
| Data processing |
Data were analyzed in two sets, blood and tissue. For each data set, it was background corrected and quantile normalized. Then LIMMA was applied to calculate significant differential expression between samples. This was performed in R (v 3.1.1) with Bioconductor packages.
|
| |
|
| Submission date |
Aug 31, 2015 |
| Last update date |
Oct 19, 2023 |
| Contact name |
Júlia Perera-Bel |
| E-mail(s) |
mardata-bu@researchmar.net
|
| Organization name |
Hospital del Mar Research Institute
|
| Department |
MARData-BU
|
| Street address |
Doctor Aiguader, 88
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL16699 |
| Series (2) |
| GSE72540 |
Gene expression profile of patients with moderate and severe chronic spontaneous urticaria [tissue] |
| GSE72542 |
Gene expression profile of patients with moderate and severe chronic spontaneous urticaria |
|
