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GEO accession:
Sample GSM185014
Query DataSets for GSM185014
Status
Public on May 01, 2008
Title
Spleen_ko_4m_rep3
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male BALB/c deficient in Il1rn
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Apr 26, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE7657
Identification of phase-specific arthritis-related genes in mice
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
144.931
P
0.001795911
AFFX-BioB-M_at
247.4379
P
0.000146581
AFFX-BioB-3_at
209.2866
P
0.00141043
AFFX-BioC-5_at
766.3368
P
0.00010954
AFFX-BioC-3_at
830.8638
P
6.02E-05
AFFX-BioDn-5_at
1250.385
P
6.02E-05
AFFX-BioDn-3_at
3607.211
P
8.14E-05
AFFX-CreX-5_at
10451.95
P
4.43E-05
AFFX-CreX-3_at
14118.6
P
4.43E-05
AFFX-DapX-5_at
6.483267
A
0.7609373
AFFX-DapX-M_at
47.49573
A
0.2390627
AFFX-DapX-3_at
20.13915
A
0.9043331
AFFX-LysX-5_at
4.697515
A
0.8605175
AFFX-LysX-M_at
41.55235
A
0.6030805
AFFX-LysX-3_at
16.74972
A
0.5
AFFX-PheX-5_at
1.644508
A
0.9780982
AFFX-PheX-M_at
3.646247
A
0.9690236
AFFX-PheX-3_at
54.27493
A
0.2165241
AFFX-ThrX-5_at
8.233377
A
0.9370872
AFFX-ThrX-M_at
1.067614
A
0.9370872
Total number of rows:
45101
Table truncated, full table size
1430 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM185014.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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