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GEO accession:
Sample GSM169439
Query DataSets for GSM169439
Status
Public on Apr 15, 2007
Title
H526
Sample type
genomic
Source name
cell line
Organism
Homo sapiens
Characteristics
SCLC cell line H526
Extracted molecule
genomic DNA
Extraction protocol
Qiagen DNAeasy kit
Label
Biotin
Label protocol
Affymetrix 100K protocol
Hybridization protocol
Affymetrix 100K protocol
Scan protocol
Affymetrix 100K protocol
Description
gDNA from cell line profiled on Affymetrix 100K arrays using the standard protocol
Data processing
Standard Affymetrix data generation protocol: CEL, CHP files generated by the GCOS and GTYPE programs.
Submission date
Feb 19, 2007
Last update date
Feb 21, 2007
Contact name
Dimitri Semizarov
E-mail(s)
dimitri.semizarov@abbott.com
Organization name
Abbott Laboratories
Street address
100 Abbott Park Rd, bld AP10, dept R4CD
City
Abbott Park
State/province
IL
ZIP/Postal code
60064
Country
USA
Platform ID
GPL2004
Series (1)
GSE7068
SCLC cell line profiling on 100K arrays
Data table header descriptions
ID_REF
VALUE
Genotype call
CONFIDENCE
confidence in SNP call
RAS1
RAS2
P-VALUE AA
p-value for the AA genotype call
P-VALUE AB
p-value for the AB genotype call
P-VALUE BB
p-value for the BB genotype call
P-VALUE NO CALL
p-value for no genotype call
Data table
ID_REF
VALUE
CONFIDENCE
RAS1
RAS2
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
AFFX-5Q-123
No Call
0
0
0
0
0
0
0
AFFX-5Q-456
No Call
0
0
0
0
0
0
0
AFFX-5Q-789
No Call
0
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
0
0
0
0
0
0
0
AFFX-barcodeA
No Call
0
0
0
0
0
0
0
AFFX-barcodeB
No Call
0
0
0
0
0
0
0
AFFX-barcodeC
No Call
0
0
0
0
0
0
0
AFFX-barcodeD
No Call
0
0
0
0
0
0
0
AFFX-barcodeE
No Call
0
0
0
0
0
0
0
AFFX-barcodeF
No Call
0
0
0
0
0
0
0
AFFX-barcodeG
No Call
0
0
0
0
0
0
0
AFFX-barcodeH
No Call
0
0
0
0
0
0
0
AFFX-barcodeI
No Call
0
0
0
0
0
0
0
AFFX-barcodeJ
No Call
0
0
0
0
0
0
0
AFFX-barcodeK
No Call
0
0
0
0
0
0
0
AFFX-barcodeL
No Call
0
0
0
0
0
0
0
AFFX-barcodeM
No Call
0
0
0
0
0
0
0
AFFX-barcodeN
No Call
0
0
0
0
0
0
0
AFFX-barcodeO
No Call
0
0
0
0
0
0
0
AFFX-barcodeP
No Call
0
0
0
0
0
0
0
Total number of rows:
57299
Table truncated, full table size
4818 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM169439.CEL.gz
14.2 Mb
(ftp)
(http)
CEL
GSM169439.CHP.gz
94.4 Kb
(ftp)
(http)
CHP
Processed data provided as supplementary file
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