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Sample GSM1630209 Query DataSets for GSM1630209
Status Public on Jun 01, 2015
Title High-fat diet 8615616005_E
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics treatment: high-fat diet (45E%) during 13 weeks.
age: 20 weeks
tissue: liver
strain: C57BL/6J
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA mini Kit, Quiagen Cat.No:80104
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Direct Hyb scanning file
Description 8615616005_E
Data processing The data were normalised using quantile normalisation with BASE
 
Submission date Mar 09, 2015
Last update date Jun 01, 2015
Contact name Petter Storm
E-mail(s) petter.storm@med.lu.se
Phone +46-40 39 12 27
Organization name Lund University
Department Developmental and Regenerative Neurobiology
Street address Sölvegatan 19, BMC A11
City Lund
ZIP/Postal code 22184
Country Sweden
 
Platform ID GPL6887
Series (1)
GSE66711 Expression data from livers from mice receiving high-fat (HF) diets supplemented with different berries

Data table header descriptions
ID_REF
VALUE Quantile normalized
8615616005_E _detection_P-value

Data table
ID_REF VALUE 8615616005_E _detection_P-value
ILMN_2417611 9.136810416 0
ILMN_2762289 4.369955391 0.3141026
ILMN_2896528 10.62248553 0
ILMN_2721178 8.406369621 0
ILMN_2458837 4.226416394 0.8557692
ILMN_3033922 8.99664951 0
ILMN_3092673 11.78777069 0
ILMN_1230777 11.36144735 0
ILMN_1246069 10.36363928 0
ILMN_1232042 4.214612796 0.9070513
ILMN_1243193 8.548016218 0
ILMN_2524361 4.286990756 0.5865384
ILMN_1242440 4.247183726 0.7649572
ILMN_1233188 4.441988374 0.1976496
ILMN_2543688 6.484643551 0
ILMN_1259789 4.780734292 0.02991453
ILMN_2816356 4.466506248 0.1623932
ILMN_1224596 4.331805398 0.4337607
ILMN_1233643 4.734228186 0.03739316
ILMN_2808939 9.760693709 0

Total number of rows: 45281

Table truncated, full table size 1467 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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