NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1630189 Query DataSets for GSM1630189
Status Public on Jun 01, 2015
Title High-fat diet + Blackcurrant 8795266008_B
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics treatment: high-fat diet (45E%) supplemented with 20% blackcurrants during 13 weeks.
age: 20 weeks
tissue: liver
strain: C57BL/6J
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA mini Kit, Quiagen Cat.No:80104
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Direct Hyb scanning file
Description 8795266008_B
Data processing The data were normalised using quantile normalisation with BASE
 
Submission date Mar 09, 2015
Last update date Jun 01, 2015
Contact name Petter Storm
E-mail(s) petter.storm@med.lu.se
Phone +46-40 39 12 27
Organization name Lund University
Department Developmental and Regenerative Neurobiology
Street address Sölvegatan 19, BMC A11
City Lund
ZIP/Postal code 22184
Country Sweden
 
Platform ID GPL6887
Series (1)
GSE66711 Expression data from livers from mice receiving high-fat (HF) diets supplemented with different berries

Data table header descriptions
ID_REF
VALUE Quantile normalized
8795266008_B _detection_P-value

Data table
ID_REF VALUE 8795266008_B _detection_P-value
ILMN_2417611 8.332805807 0
ILMN_2762289 4.166291845 0.9882479
ILMN_2896528 10.8057813 0
ILMN_2721178 8.669767465 0
ILMN_2458837 4.255102233 0.7040598
ILMN_3033922 9.166999154 0
ILMN_3092673 11.58166418 0
ILMN_1230777 11.2054564 0
ILMN_1246069 8.816087091 0
ILMN_1232042 4.231457468 0.8119658
ILMN_1243193 8.812208573 0
ILMN_2524361 4.308701391 0.5096154
ILMN_1242440 4.178162354 0.9786325
ILMN_1233188 4.478556953 0.1698718
ILMN_2543688 6.704050608 0
ILMN_1259789 4.442861672 0.2029915
ILMN_2816356 4.407011369 0.2532051
ILMN_1224596 4.328759509 0.4615385
ILMN_1233643 4.443018748 0.2029915
ILMN_2808939 9.535323488 0

Total number of rows: 45281

Table truncated, full table size 1469 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap