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Sample GSM1630188 Query DataSets for GSM1630188
Status Public on Jun 01, 2015
Title High-fat diet + Blackcurrant 8615616083_B
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics treatment: high-fat diet (45E%) supplemented with 20% blackcurrants during 13 weeks.
age: 20 weeks
tissue: liver
strain: C57BL/6J
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA mini Kit, Quiagen Cat.No:80104
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Direct Hyb scanning file
Description 8615616083_B
Data processing The data were normalised using quantile normalisation with BASE
 
Submission date Mar 09, 2015
Last update date Jun 01, 2015
Contact name Petter Storm
E-mail(s) petter.storm@med.lu.se
Phone +46-40 39 12 27
Organization name Lund University
Department Developmental and Regenerative Neurobiology
Street address Sölvegatan 19, BMC A11
City Lund
ZIP/Postal code 22184
Country Sweden
 
Platform ID GPL6887
Series (1)
GSE66711 Expression data from livers from mice receiving high-fat (HF) diets supplemented with different berries

Data table header descriptions
ID_REF
VALUE Quantile normalized
8615616083_B _detection_P-value

Data table
ID_REF VALUE 8615616083_B _detection_P-value
ILMN_2417611 9.118627324 0
ILMN_2762289 4.276666803 0.6324787
ILMN_2896528 10.88505899 0
ILMN_2721178 8.302143422 0
ILMN_2458837 4.203933502 0.9241453
ILMN_3033922 8.89848244 0
ILMN_3092673 11.69697982 0
ILMN_1230777 11.1921883 0
ILMN_1246069 10.49139391 0
ILMN_1232042 4.188493944 0.9668803
ILMN_1243193 8.786138007 0
ILMN_2524361 4.256450185 0.7254273
ILMN_1242440 4.212989665 0.8910257
ILMN_1233188 4.641598997 0.05235043
ILMN_2543688 6.697556348 0
ILMN_1259789 4.310765307 0.4882479
ILMN_2816356 4.608223035 0.06089744
ILMN_1224596 4.915193855 0.00534188
ILMN_1233643 4.567875181 0.07905983
ILMN_2808939 9.564477056 0

Total number of rows: 45281

Table truncated, full table size 1453 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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