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Sample GSM1630187 Query DataSets for GSM1630187
Status Public on Jun 01, 2015
Title High-fat diet + Blackcurrant 8615616040_B
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics treatment: high-fat diet (45E%) supplemented with 20% blackcurrants during 13 weeks.
age: 20 weeks
tissue: liver
strain: C57BL/6J
Extracted molecule total RNA
Extraction protocol AllPrep DNA/RNA mini Kit, Quiagen Cat.No:80104
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Direct Hyb scanning file
Description 8615616040_B
Data processing The data were normalised using quantile normalisation with BASE
 
Submission date Mar 09, 2015
Last update date Jun 01, 2015
Contact name Petter Storm
E-mail(s) petter.storm@med.lu.se
Phone +46-40 39 12 27
Organization name Lund University
Department Developmental and Regenerative Neurobiology
Street address Sölvegatan 19, BMC A11
City Lund
ZIP/Postal code 22184
Country Sweden
 
Platform ID GPL6887
Series (1)
GSE66711 Expression data from livers from mice receiving high-fat (HF) diets supplemented with different berries

Data table header descriptions
ID_REF
VALUE Quantile normalized
8615616040_B _detection_P-value

Data table
ID_REF VALUE 8615616040_B _detection_P-value
ILMN_2417611 9.011828417 0
ILMN_2762289 4.276922153 0.6282051
ILMN_2896528 10.42635704 0
ILMN_2721178 8.206847842 0
ILMN_2458837 4.231311362 0.8333333
ILMN_3033922 8.727821229 0
ILMN_3092673 11.736967 0
ILMN_1230777 11.28652328 0
ILMN_1246069 10.1340365 0
ILMN_1232042 4.227048214 0.8504273
ILMN_1243193 8.801278227 0
ILMN_2524361 4.273514843 0.6431624
ILMN_1242440 4.367686619 0.3162393
ILMN_1233188 4.439212265 0.1912393
ILMN_2543688 6.148843015 0
ILMN_1259789 4.830025305 0.02029915
ILMN_2816356 4.251817616 0.7393162
ILMN_1224596 4.317295993 0.4561966
ILMN_1233643 4.373951362 0.3087607
ILMN_2808939 9.720415248 0

Total number of rows: 45281

Table truncated, full table size 1465 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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