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Sample GSM161956 Query DataSets for GSM161956
Status Public on Jan 28, 2010
Title DM2_M47_VL_11
Sample type RNA
 
Source name Skeletal Muscle
Organism Homo sapiens
Characteristics DM2 patient
biopsy site: Vastus Lateralis
Treatment protocol n/a
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5, using 5 ug total RNA
 
Hybridization protocol standard Affymetrix GeneChip Expression Analysis Technical Manual, Rev5
Scan protocol Scanning was performed using the Affymetrix Fluidic Station 450, protocol EuKGE-WS2v5
Description DM2 patient, age 47, gender Male
Data processing from the CEL files, we normalyzed and analyzed the data using the DChip 2006 (DNA-Chip Analyzer) software (MBEI analysis, PM only model). Build date: Feb 16 2006. Normalization was carried against a normal control sample (N_M43_?_03)
 
Submission date Feb 12, 2007
Last update date Mar 15, 2011
Contact name Mario Sirito
E-mail(s) msirito@mdanderson.org
Organization name M. D. Anderson Cancer Center
Department Cancer Genetics
Street address 1515 Holcombe blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL570
Series (1)
GSE7014 Expression data from DM1, DM2 and Normal Adult Skeletal Muscle Biopsies

Data table header descriptions
ID_REF Affymetrix probeset ID
VALUE Dchip calculated signal intensity (MBEI)
SE Standard Error of VALUE, as calculated by the Dchip software

Data table
ID_REF VALUE SE
AFFX-BioB-5_at 597.388 10.9922
AFFX-BioB-M_at 802.215 13.7049
AFFX-BioB-3_at 745.067 11.5038
AFFX-BioC-5_at 1791.61 47.4001
AFFX-BioC-3_at 2016.3 44.4583
AFFX-BioDn-5_at 1546.39 85.5074
AFFX-BioDn-3_at 6766.5 74.1367
AFFX-CreX-5_at 13077.8 183.898
AFFX-CreX-3_at 16338.8 211.382
AFFX-DapX-5_at 197.423 6.71169
AFFX-DapX-M_at 729.764 40.0219
AFFX-DapX-3_at 1128.56 38.5445
AFFX-LysX-5_at 68.22 6.30199
AFFX-LysX-M_at 142.374 6.72671
AFFX-LysX-3_at 183.515 11.9368
AFFX-PheX-5_at 80.3363 5.13494
AFFX-PheX-M_at 118.929 5.47987
AFFX-PheX-3_at 322.031 18.5834
AFFX-ThrX-5_at 143.634 3.21558
AFFX-ThrX-M_at 137.793 9.86929

Total number of rows: 34174

Table truncated, full table size 885 Kbytes.




Supplementary file Size Download File type/resource
GSM161956.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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