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Sample GSM1599182 Query DataSets for GSM1599182
Status Public on Feb 03, 2015
Title Primary human monocytes from healthy control #2
Sample type RNA
 
Source name Primary human monocytes
Organism Homo sapiens
Characteristics cell type: primary monocyte
disease state: Healthy control
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with TRIZOL. Quality control was performed with Agilent 2100 Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description HC.2
Data processing Data was handled and normalized in BASE (https://casa4.bmc.lu.se/onk/). All data was mean background corrected followed by quantile normalization. Array control probes were removed.
 
Submission date Feb 02, 2015
Last update date Feb 03, 2015
Contact name Kristoffer von Stedingk
E-mail(s) kristoffer.von_stedingk@med.lu.se
Organization name Lund University
Street address Scheelevägen 2
City Lund
ZIP/Postal code 223 81
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE65517 Comparative analysis of monocytes from healthy donors, patients with metastatic breast cancer, sepsis or tuberculosis.

Data table header descriptions
ID_REF
VALUE Nomalized values represent mean background corrected, quantile normalized raw signal instensities.

Data table
ID_REF VALUE
ILMN_1725881 9.104167
ILMN_1910180 3.2708333
ILMN_1804174 40.145832
ILMN_1796063 309.27084
ILMN_3284771 -4.8958335
ILMN_3208259 0.39583334
ILMN_1811966 16.354166
ILMN_1668162 -10.1875
ILMN_1715600 -3.2708333
ILMN_1912287 10.645833
ILMN_1793729 382.39584
ILMN_2296644 1.2708334
ILMN_1711283 13.354167
ILMN_1682799 19.270834
ILMN_3305563 -8.395833
ILMN_3228954 -5.7708335
ILMN_3243894 -4.8958335
ILMN_3246479 -8.395833
ILMN_1665311 1.2708334
ILMN_1657235 0.39583334

Total number of rows: 47315

Table truncated, full table size 1036 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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