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Sample GSM1573800 Query DataSets for GSM1573800
Status Public on Oct 12, 2015
Title V.hc.rep2
Sample type RNA
 
Source name Vestibular HCs
Organism Mus musculus
Characteristics strain: Atoh1/nGFP (C57BL/6)
age: P1
organ: Vestibular system
cell type: HCs
Treatment protocol cells obtained by cell sorting
Growth protocol mouse inner ear tissue
Extracted molecule total RNA
Extraction protocol RNeasy Plus Micro Kit (Qiagen)
Label biotin
Label protocol Total RNA was pre-amplified with the Ovation RNA Amplification System V2 (NuGEN). The A total of 1.5 µg of cDNA was then processed and labeled following the manufacturer's protocol.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data were normalized using quantile normalization
 
Submission date Dec 29, 2014
Last update date Oct 12, 2015
Contact name Ran Elkon
Organization name Tel Aviv University
Department Human Genetics
Street address Ramat Aviv
City Tel Aviv
ZIP/Postal code 69494
Country Israel
 
Platform ID GPL6887
Series (2)
GSE64543 Expression profiling of murine inner-ear hair cells
GSE67480 Expression profiling of Murine and Zebrafish hair cells

Data table header descriptions
ID_REF
VALUE quantile normalized
V.hc.rep2.Pval

Data table
ID_REF VALUE V.hc.rep2.Pval
ILMN_1250052 164.95 0.00107
ILMN_1251402 86.89 0.76709
ILMN_3122480 96.41 0.21474
ILMN_1230863 174.78 0.00107
ILMN_2599935 493.97 0
ILMN_1249762 1593.94 0
ILMN_2653194 145.02 0.00107
ILMN_1227991 94.40 0.28098
ILMN_2445236 105.29 0.04808
ILMN_2675543 95.25 0.24786
ILMN_2635314 89.70 0.55235
ILMN_1212991 115.22 0.01068
ILMN_2686883 218.98 0
ILMN_1223534 95.47 0.23825
ILMN_2514305 163.84 0.00107
ILMN_2751818 94.10 0.29487
ILMN_1217583 93.31 0.32799
ILMN_1222597 110.01 0.01816
ILMN_1242561 87.57 0.71902
ILMN_2728634 100.28 0.10897

Total number of rows: 45281

Table truncated, full table size 1157 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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