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Sample GSM1573099 Query DataSets for GSM1573099
Status Public on Jun 03, 2015
Title Parietal of subject 393 (Sample259)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 393
Sex: M
predicted gender: male
age: 73
dna methylation age: 58.9575330963391
age acceleration with respect to noncerebellar samples: 0.549936755331295
cor sample vs gold standard: 0.885665512175994
mean abs difference sample vs gold standard: 0.0864414790237139
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3939185
cg00000108 0.8906608
cg00000109 0.6263869
cg00000165 0.1622614
cg00000236 0.787861
cg00000289 0.362069
cg00000292 0.6716006
cg00000321 0.5986729
cg00000363 0.1227566
cg00000622 0.02013825
cg00000658 0.7647778
cg00000714 0.09378418
cg00000721 0.8723162
cg00000734 0.07013946
cg00000769 0.05188742
cg00000807 0.8794386
cg00000884 0.783114
cg00000905 0.09846547
cg00000924 0.6129931
cg00000948 0.9056369

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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