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Sample GSM1573083 Query DataSets for GSM1573083
Status Public on Jun 03, 2015
Title Occipital of subject 17 (Sample243)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 17
Sex: M
predicted gender: male
age: 15
dna methylation age: 12.2218806895845
age acceleration with respect to noncerebellar samples: -8.16594776511837
cor sample vs gold standard: 0.898173163996191
mean abs difference sample vs gold standard: 0.0819906338125049
postmortem interval: 6
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4635762
cg00000108 0.8395091
cg00000109 0.7302741
cg00000165 0.1670702
cg00000236 0.7789225
cg00000289 0.5010912
cg00000292 0.7062307
cg00000321 0.5273806
cg00000363 0.1332499
cg00000622 0.02020285
cg00000658 0.7778361
cg00000714 0.09117961
cg00000721 0.9028783
cg00000734 0.06031994
cg00000769 0.03328259
cg00000807 0.8797117
cg00000884 0.7492579
cg00000905 0.08042043
cg00000924 0.6690304
cg00000948 0.906933

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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