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Sample GSM1573075 Query DataSets for GSM1573075
Status Public on Jun 03, 2015
Title Parietal of subject 467 (Sample235)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 467
Sex: M
predicted gender: male
age: 41
dna methylation age: 27.6084170991417
age acceleration with respect to noncerebellar samples: -9.82275558045648
cor sample vs gold standard: 0.885833392559191
mean abs difference sample vs gold standard: 0.0856786073473557
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3889251
cg00000108 0.8591964
cg00000109 0.6993836
cg00000165 0.1694291
cg00000236 0.7301354
cg00000289 0.3399482
cg00000292 0.7056388
cg00000321 0.3746551
cg00000363 0.1732229
cg00000622 0.02148332
cg00000658 0.7605777
cg00000714 0.09316345
cg00000721 0.8381618
cg00000734 0.06050614
cg00000769 0.03603604
cg00000807 0.8843862
cg00000884 0.7656149
cg00000905 0.1334864
cg00000924 0.563191
cg00000948 0.9242936

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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