GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1573073 Query DataSets for GSM1573073
Status Public on Jun 03, 2015
Title Visual Cortex of subject 513 (Sample233)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 513
Sex: M
predicted gender: male
age: 41
dna methylation age: 36.5546048025446
age acceleration with respect to noncerebellar samples: -0.876567877053581
cor sample vs gold standard: 0.884796504920321
mean abs difference sample vs gold standard: 0.085310052560633
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4700404
cg00000108 0.8357787
cg00000109 0.706499
cg00000165 0.1434127
cg00000236 0.758872
cg00000289 0.3996719
cg00000292 0.7058168
cg00000321 0.3745812
cg00000363 0.09169579
cg00000622 0.03269767
cg00000658 0.7810609
cg00000714 0.09005195
cg00000721 0.8619909
cg00000734 0.05402417
cg00000769 0.03884241
cg00000807 0.8816946
cg00000884 0.6923697
cg00000905 0.1011886
cg00000924 0.5878815
cg00000948 0.8788674

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap