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Sample GSM1573005 Query DataSets for GSM1573005
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 283 (Sample165)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 22.8327937536223
age acceleration with respect to noncerebellar samples: -8.69875977120443
cor sample vs gold standard: 0.890686361317887
mean abs difference sample vs gold standard: 0.0869430272178739
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4955779
cg00000108 0.9076978
cg00000109 0.7315288
cg00000165 0.1507235
cg00000236 0.8007576
cg00000289 0.439441
cg00000292 0.7212255
cg00000321 0.507877
cg00000363 0.1962562
cg00000622 0.01358055
cg00000658 0.844642
cg00000714 0.1214613
cg00000721 0.8757347
cg00000734 0.05819413
cg00000769 0.04165793
cg00000807 0.8634822
cg00000884 0.8494707
cg00000905 0.1458202
cg00000924 0.6620489
cg00000948 0.8981455

Total number of rows: 485577

Table truncated, full table size 10025 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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