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Sample GSM1572989 Query DataSets for GSM1572989
Status Public on Jun 03, 2015
Title CRBM of subject 299 (Sample149)
Sample type genomic
Source name Brain CRBM
Organism Homo sapiens
Characteristics tissue: Brain CRBM
subject id: 299
Sex: F
predicted gender: female
age: 101
dna methylation age: 58.0628845953129
age acceleration with respect to noncerebellar samples: -18.6990824494283
cor sample vs gold standard: 0.839134677453665
mean abs difference sample vs gold standard: 0.0976147222514607
postmortem interval: 28
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5442478
cg00000108 0.4548031
cg00000109 0.8185164
cg00000165 0.2951953
cg00000236 0.6870352
cg00000289 0.3865706
cg00000292 0.6403851
cg00000321 0.2431018
cg00000363 0.08186398
cg00000622 0.02375074
cg00000658 0.823727
cg00000714 0.06744341
cg00000721 0.8955752
cg00000734 0.07559216
cg00000769 0.04419215
cg00000807 0.9039055
cg00000884 0.8397653
cg00000905 0.107357
cg00000924 0.6657459
cg00000948 0.9023874

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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