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Sample GSM1572964 Query DataSets for GSM1572964
Status Public on Jun 03, 2015
Title Occipital of subject 131 (Sample124)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 131
Sex: F
predicted gender: female
age: 111
dna methylation age: 70.1640478407066
age acceleration with respect to noncerebellar samples: -13.1530515982251
cor sample vs gold standard: 0.883659975549743
mean abs difference sample vs gold standard: 0.0877002222797165
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.576184
cg00000108 0.8979811
cg00000109 0.7145299
cg00000165 0.1955677
cg00000236 0.7848055
cg00000289 0.5466942
cg00000292 0.7423785
cg00000321 0.4991092
cg00000363 0.1420014
cg00000622 0.02870953
cg00000658 0.7941018
cg00000714 0.1078015
cg00000721 0.8850386
cg00000734 0.05795996
cg00000769 0.05524425
cg00000807 0.9162447
cg00000884 0.7694096
cg00000905 0.09045105
cg00000924 0.6646254
cg00000948 0.9190149

Total number of rows: 485577

Table truncated, full table size 10032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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