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Sample GSM1572950 Query DataSets for GSM1572950
Status Public on Jun 03, 2015
Title Mid of subject 57 (Sample110)
Sample type genomic
Source name Brain MidBrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 57
Sex: F
predicted gender: female
age: 58
dna methylation age: 39.9131938730453
age acceleration with respect to noncerebellar samples: -8.66170387667674
cor sample vs gold standard: 0.891103872995882
mean abs difference sample vs gold standard: 0.0817619538509016
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4256804
cg00000108 0.8656974
cg00000109 0.5617334
cg00000165 0.3193858
cg00000236 0.8392413
cg00000289 0.4260712
cg00000292 0.6468839
cg00000321 0.2104651
cg00000363 0.1166274
cg00000622 0.01868
cg00000658 0.8177831
cg00000714 0.1328959
cg00000721 0.8787942
cg00000734 0.05692903
cg00000769 0.03287569
cg00000807 0.8860999
cg00000884 0.7001287
cg00000905 0.1084566
cg00000924 0.58943
cg00000948 0.8956161

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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