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Sample GSM1572942 Query DataSets for GSM1572942
Status Public on Jun 03, 2015
Title Parietal of subject 513 (Sample102)
Sample type genomic
Source name Brain Parietal
Organism Homo sapiens
Characteristics tissue: Brain Parietal
subject id: 513
Sex: M
predicted gender: male
age: 41
dna methylation age: 33.2622238940564
age acceleration with respect to noncerebellar samples: -4.16894878554179
cor sample vs gold standard: 0.888314665349546
mean abs difference sample vs gold standard: 0.085432022115206
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4302326
cg00000108 0.8945714
cg00000109 0.7308289
cg00000165 0.2773579
cg00000236 0.7372881
cg00000289 0.5425841
cg00000292 0.7078929
cg00000321 0.5289129
cg00000363 0.1802556
cg00000622 0.01973532
cg00000658 0.8224646
cg00000714 0.1107896
cg00000721 0.9075984
cg00000734 0.07152446
cg00000769 0.04214995
cg00000807 0.8943129
cg00000884 0.7450827
cg00000905 0.1089561
cg00000924 0.6823478
cg00000948 0.9175344

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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