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Sample GSM1572941 Query DataSets for GSM1572941
Status Public on Jun 03, 2015
Title Sensory Cortex of subject 467 (Sample101)
Sample type genomic
Source name Brain Sensory Cortex
Organism Homo sapiens
Characteristics tissue: Brain Sensory Cortex
subject id: 467
Sex: M
predicted gender: male
age: 41
dna methylation age: 24.5952421342031
age acceleration with respect to noncerebellar samples: -12.8359305453951
cor sample vs gold standard: 0.875337774360671
mean abs difference sample vs gold standard: 0.0927757472792194
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4428443
cg00000108 0.6639802
cg00000109 0.3087092
cg00000165 0.315748
cg00000236 0.4380715
cg00000289 0.3556399
cg00000292 0.7800527
cg00000321 0.4998647
cg00000363 0.2971352
cg00000622 0.01962299
cg00000658 0.7871164
cg00000714 0.1414953
cg00000721 0.5774947
cg00000734 0.064604
cg00000769 0.04101757
cg00000807 0.9138976
cg00000884 0.5613911
cg00000905 0.2299724
cg00000924 0.6035475
cg00000948 0.8957923

Total number of rows: 485577

Table truncated, full table size 10027 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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