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Sample GSM1572930 Query DataSets for GSM1572930
Status Public on Jun 03, 2015
Title Hippocampus of subject 328 (Sample90)
Sample type genomic
Source name Brain Hippocampus
Organism Homo sapiens
Characteristics tissue: Brain Hippocampus
subject id: 328
Sex: F
predicted gender: female
age: 59
dna methylation age: 43.906281929299
age acceleration with respect to noncerebellar samples: -5.32412905984209
cor sample vs gold standard: 0.891603432772848
mean abs difference sample vs gold standard: 0.0829348978799951
postmortem interval: 20
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5715804
cg00000108 0.9081805
cg00000109 0.7199732
cg00000165 0.1685979
cg00000236 0.791854
cg00000289 0.4617517
cg00000292 0.6475417
cg00000321 0.5423729
cg00000363 0.1836032
cg00000622 0.009693765
cg00000658 0.7792381
cg00000714 0.1215138
cg00000721 0.8887502
cg00000734 0.04754358
cg00000769 0.04094632
cg00000807 0.9237163
cg00000884 0.7981439
cg00000905 0.09009346
cg00000924 0.6295674
cg00000948 0.9105116

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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