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Sample GSM1572928 Query DataSets for GSM1572928
Status Public on Jun 03, 2015
Title Cingulate Gyrus of subject 407 (Sample88)
Sample type genomic
Source name Brain Cingulate Gyrus
Organism Homo sapiens
Characteristics tissue: Brain Cingulate Gyrus
subject id: 407
Sex: M
predicted gender: male
age: 81
dna methylation age: 64.4866389989701
age acceleration with respect to noncerebellar samples: 0.834936742609891
cor sample vs gold standard: 0.897000771120972
mean abs difference sample vs gold standard: 0.0811519409824321
postmortem interval: 7
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.5069444
cg00000108 0.911549
cg00000109 0.7126644
cg00000165 0.16829
cg00000236 0.8216978
cg00000289 0.4450128
cg00000292 0.7095085
cg00000321 0.4981646
cg00000363 0.1637841
cg00000622 0.01177793
cg00000658 0.8133545
cg00000714 0.1032662
cg00000721 0.892877
cg00000734 0.05481402
cg00000769 0.03399935
cg00000807 0.9073187
cg00000884 0.7646722
cg00000905 0.08433253
cg00000924 0.6121162
cg00000948 0.8811705

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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