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Sample GSM1572871 Query DataSets for GSM1572871
Status Public on Jun 03, 2015
Title Visual Cortex of subject 437 (Sample31)
Sample type genomic
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 437
Sex: F
predicted gender: female
age: 36
dna methylation age: 32.6504833013784
age acceleration with respect to noncerebellar samples: -1.50312318112454
cor sample vs gold standard: 0.886195218223439
mean abs difference sample vs gold standard: 0.0859153452980562
postmortem interval: 11
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.3851317
cg00000108 0.8954385
cg00000109 0.7075741
cg00000165 0.1783665
cg00000236 0.7666115
cg00000289 0.4340071
cg00000292 0.7128353
cg00000321 0.5222025
cg00000363 0.1614534
cg00000622 0.01722111
cg00000658 0.7978697
cg00000714 0.1229171
cg00000721 0.8571429
cg00000734 0.06668907
cg00000769 0.03614287
cg00000807 0.8885329
cg00000884 0.7890404
cg00000905 0.1092509
cg00000924 0.6419389
cg00000948 0.8839413

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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