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Sample GSM1572429 Query DataSets for GSM1572429
Status Public on Jun 03, 2015
Title genomic DNA from Stomach of a 112 year old female subject (Sample48)
Sample type genomic
Source name Stomach
Organism Homo sapiens
Characteristics tissue: Stomach
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 83.4788043661791
cor sample vs gold standard: 0.895081682905502
mean abs difference sample vs gold standard: 0.0860406265822402
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.308466
cg00000108 0.9046652
cg00000109 0.8428479
cg00000165 0.1634512
cg00000236 0.7618454
cg00000289 0.4859891
cg00000292 0.6451789
cg00000321 0.4344735
cg00000363 0.2064158
cg00000622 0.02879115
cg00000658 0.8096932
cg00000714 0.09736746
cg00000721 0.8673687
cg00000734 0.06725042
cg00000769 0.04351454
cg00000807 0.8191073
cg00000884 0.7895198
cg00000905 0.08934231
cg00000924 0.6681769
cg00000948 0.9019322

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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