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Sample GSM1572427 Query DataSets for GSM1572427
Status Public on Jun 03, 2015
Title genomic DNA from BrainTemporal of a 112 year old female subject (Sample46)
Sample type genomic
Source name BrainTemporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 76.8114250557855
cor sample vs gold standard: 0.895493188090804
mean abs difference sample vs gold standard: 0.0867009423691625
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4612483
cg00000108 0.8985894
cg00000109 0.7328232
cg00000165 0.2170543
cg00000236 0.7983155
cg00000289 0.4035785
cg00000292 0.678481
cg00000321 0.4302946
cg00000363 0.129407
cg00000622 0.01863751
cg00000658 0.7905656
cg00000714 0.09261196
cg00000721 0.8585644
cg00000734 0.07446975
cg00000769 0.05026008
cg00000807 0.8890895
cg00000884 0.8073451
cg00000905 0.1096171
cg00000924 0.6468337
cg00000948 0.8921038

Total number of rows: 485577

Table truncated, full table size 10023 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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