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Sample GSM1572422 Query DataSets for GSM1572422
Status Public on Jun 03, 2015
Title genomic DNA from Colon of a 112 year old female subject (Sample41)
Sample type genomic
Source name Colon
Organism Homo sapiens
Characteristics tissue: Colon
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 90.9595075945113
cor sample vs gold standard: 0.914891257218499
mean abs difference sample vs gold standard: 0.0805568215737778
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2937325
cg00000108 0.9129322
cg00000109 0.738983
cg00000165 0.2633003
cg00000236 0.720548
cg00000289 0.4895985
cg00000292 0.6104351
cg00000321 0.3742034
cg00000363 0.2165585
cg00000622 0.02304175
cg00000658 0.8147878
cg00000714 0.1074659
cg00000721 0.9015697
cg00000734 0.05817265
cg00000769 0.0301929
cg00000807 0.8053592
cg00000884 0.8150355
cg00000905 0.09029004
cg00000924 0.706276
cg00000948 0.887975

Total number of rows: 485577

Table truncated, full table size 10021 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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