GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572417 Query DataSets for GSM1572417
Status Public on Jun 03, 2015
Title genomic DNA from BrainMidbrain of a 112 year old female subject (Sample36)
Sample type genomic
Source name BrainMidbrain
Organism Homo sapiens
Characteristics tissue: Brain MidBrain
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 81.0051495310126
cor sample vs gold standard: 0.903290226983848
mean abs difference sample vs gold standard: 0.0850720037405779
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4462391
cg00000108 0.8441758
cg00000109 0.5093901
cg00000165 0.3679551
cg00000236 0.764473
cg00000289 0.4066844
cg00000292 0.6017985
cg00000321 0.2879361
cg00000363 0.1556551
cg00000622 0.05993899
cg00000658 0.7733241
cg00000714 0.1339043
cg00000721 0.8187996
cg00000734 0.07400824
cg00000769 0.04300567
cg00000807 0.8568864
cg00000884 0.7696502
cg00000905 0.1140669
cg00000924 0.6235413
cg00000948 0.8876696

Total number of rows: 485577

Table truncated, full table size 10008 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap