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Sample GSM1572413 Query DataSets for GSM1572413
Status Public on Jun 03, 2015
Title genomic DNA from Stomach of a 112 year old female subject (Sample32)
Sample type genomic
Source name Stomach
Organism Homo sapiens
Characteristics tissue: Stomach
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 89.4879859354408
cor sample vs gold standard: 0.922133848891443
mean abs difference sample vs gold standard: 0.0761048905531189
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2537037
cg00000108 0.9308041
cg00000109 0.7086
cg00000165 0.2633864
cg00000236 0.7476979
cg00000289 0.4925569
cg00000292 0.6293491
cg00000321 0.3770026
cg00000363 0.2250438
cg00000622 0.01322438
cg00000658 0.8172614
cg00000714 0.1120372
cg00000721 0.9291785
cg00000734 0.05922358
cg00000769 0.03162524
cg00000807 0.8432732
cg00000884 0.834781
cg00000905 0.06764624
cg00000924 0.6731866
cg00000948 0.8989419

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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