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Sample GSM1572412 Query DataSets for GSM1572412
Status Public on Jun 03, 2015
Title genomic DNA from Breast of a 112 year old female subject (Sample31)
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
subject id: 487
Sex: female
predicted gender: female
age: 112
dna methylation age: 91.5954553473113
cor sample vs gold standard: 0.908418643915556
mean abs difference sample vs gold standard: 0.0806051755885568
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64491 DNA methylation profiles of 30 tissues from a 112 year old woman
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.2215088
cg00000108 0.9112844
cg00000109 0.7846029
cg00000165 0.2695222
cg00000236 0.7700333
cg00000289 0.5123186
cg00000292 0.6043288
cg00000321 0.2741579
cg00000363 0.1765935
cg00000622 0.01765054
cg00000658 0.8309999
cg00000714 0.09157727
cg00000721 0.9172318
cg00000734 0.05272558
cg00000769 0.03494405
cg00000807 0.8226074
cg00000884 0.774214
cg00000905 0.09295247
cg00000924 0.6780159
cg00000948 0.922766

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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